PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G242700.1.p
Common NamePRUPE_ppa011714mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 200aa    MW: 21409.6 Da    PI: 7.2146
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G242700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.71.4e-5722117297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdr+lPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+++re
  Prupe.4G242700.1.p  22 REQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE 112
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Prupe.4G242700.1.p 113 MEGEK 117
                         ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.4E-5616153IPR009072Histone-fold
SuperFamilySSF471133.73E-4124128IPR009072Histone-fold
PfamPF008081.2E-272791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.1E-215573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.1E-217492No hitNo description
PRINTSPR006158.1E-2193111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MADSDNDSGG AHTKSNSELS PREQDRLLPI ANVSRIMKKA LPANAKISKD AKETVQECVS  60
EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEEYV EPLKVYLQRF REMEGEKSSV  120
AARDKDASGG GGNGGVGYES GGGSGGAGVY WQQQQQQQQH QHQHQHQGHV YGGSGFHQMG  180
VSGVGLGKGG PGSNMGRPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_A7e-4819112194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B7e-4819112194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212085.11e-146hypothetical protein PRUPE_ppa011714mg
SwissprotO233107e-73NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLM5WHU01e-146M5WHU0_PRUPE; Uncharacterized protein
STRINGVIT_19s0015g00440.t014e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-74nuclear factor Y, subunit B3